ACDA
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Overview
Getting Started
Description of the API
Input data format
Examples
Description of the plotting function
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Index
Index
A
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C
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D
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E
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F
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G
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M
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P
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R
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S
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T
A
acda.general_functions (module)
acda.method_functions (module)
acda.plot_functions (module)
averagePredictionPairs() (in module acda.method_functions)
C
centerDf() (in module acda.general_functions)
convertProteinNamesToGenes() (in module acda.general_functions)
D
downsampleRun() (in module acda.method_functions)
drawOneDownsampled() (in module acda.plot_functions)
E
encodeNames() (in module acda.general_functions)
F
fetchMySQL() (in module acda.general_functions)
filter_synergy_pairs_list() (in module acda.method_functions)
fit_validate_predict() (in module acda.method_functions)
G
getCDAdrugDistance() (in module acda.method_functions)
getDistanceAndSensitivityData() (in module acda.method_functions)
getGeneToProteinNameAssociation() (in module acda.general_functions)
M
makeBarplotCrossDatasets() (in module acda.plot_functions)
makeBarplotSingleDatasets() (in module acda.plot_functions)
makeCDAformattedData() (in module acda.method_functions)
MonteCarloCrossValidation() (in module acda.method_functions)
P
plotDendrogramWithKnownPairs() (in module acda.plot_functions)
plotHeatmapPredictedSynergy() (in module acda.plot_functions)
prepareFromAZforCDA() (in module acda.method_functions)
prepareFromDCforCDA() (in module acda.method_functions)
prepareFromDCfull() (in module acda.method_functions)
prepDfTa() (in module acda.method_functions)
prepDfTas() (in module acda.method_functions)
R
ro_normalized() (in module acda.general_functions)
S
sample_train_predicted() (in module acda.method_functions)
split_train_test_validate_predict() (in module acda.method_functions)
T
testCase() (in module acda.method_functions)
trainOneTestAnother() (in module acda.method_functions)
tryExcept() (in module acda.method_functions)